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  5. Solyc04g014560.4.1

Solyc04g014560.4.1 (ATSRL1, Solyc04g014560)


Aliases : ATSRL1, Solyc04g014560

Description : Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana (sp|q8rwb1|srl1_arath : 387.0)


Gene families : OG0003543 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003543_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g014560.4.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00011550 ATSRL1,... Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT5G37370 ATSRL1 PRP38 family protein 0.03 OrthoFinder output from all 47 species
Adi_g060960 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074094 ATSRL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04795 ATSRL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07227 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27184 ATSRL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05835 ATSRL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12446 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G036200.1 ATSRL1, Ceric.07G036200 not classified & original description: pacid=50627179... 0.08 OrthoFinder output from all 47 species
Ehy_g27443 ATSRL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04762 ATSRL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g36065 ATSRL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g06861 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025788 ATSRL1 not classified & original description: CDS=295-1590 0.05 OrthoFinder output from all 47 species
Sam_g38592 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo83934 ATSRL1 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Spa_g19184 ATSRL1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e036528_P001 ATSRL1, Zm00001e036528 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005037 PRP38 13 163
IPR024767 PRP38_C 184 278
No external refs found!