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  5. Solyc04g011580.4.1

Solyc04g011580.4.1 (PUM1, APUM1, Solyc04g011580)


Aliases : PUM1, APUM1, Solyc04g011580

Description : Pumilio homolog 1 OS=Arabidopsis thaliana (sp|q9zw07|pum1_arath : 877.0)


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g011580.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00181800 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g023994 PUM5, APUM5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075414 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g25094 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016236001 APUM4, PUM4 Pumilio homolog 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Len_g13786 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02142 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0046903 secretion IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 833 864
IPR001313 Pumilio_RNA-bd_rpt 804 828
IPR001313 Pumilio_RNA-bd_rpt 905 937
IPR001313 Pumilio_RNA-bd_rpt 687 720
IPR001313 Pumilio_RNA-bd_rpt 760 790
IPR001313 Pumilio_RNA-bd_rpt 726 755
IPR001313 Pumilio_RNA-bd_rpt 868 902
IPR001313 Pumilio_RNA-bd_rpt 954 980
IPR012940 NABP 313 405
IPR012940 NABP 402 686
No external refs found!