Solyc04g010310.4.1 (PGP20, Solyc04g010310)

Aliases : PGP20, Solyc04g010310

Description : subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g010310.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00145p00075460	PGP20,...	Solute transport.primary active transport.ABC...	0.05	OrthoFinder output from all 47 species
AT2G39480	PGP6	P-glycoprotein 6	0.04	OrthoFinder output from all 47 species
AT3G62150	PGP21	P-glycoprotein 21	0.04	OrthoFinder output from all 47 species
AT4G18050	PGP9	P-glycoprotein 9	0.03	OrthoFinder output from all 47 species
Aev_g03413	PGP6	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g15862	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g21203	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g06806	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g38133	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46501.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene52651.t1	PGP2, Aspi01Gene52651	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0002.g001326	PGP20	subfamily ABCB transporter & original description: CDS=439-4584	0.06	OrthoFinder output from all 47 species
Azfi_s0039.g026389	PGP11	subfamily ABCB transporter & original description: CDS=323-4378	0.03	OrthoFinder output from all 47 species
Ceric.02G084300.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.06	OrthoFinder output from all 47 species
Ceric.10G028600.1	PGP20, Ceric.10G028600	subfamily ABCB transporter & original description:...	0.06	OrthoFinder output from all 47 species
Dac_g10744	PGP6	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g12528	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g32173	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g45466	PGP11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g08658	PGP6	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g08924	PGP20	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g47815	PGP11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08692	PGP20	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01016617001	PGP20	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Gb_20009	PGP6	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_31652	PGP6	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Gb_32487	PGP1, ABCB1, ATPGP1	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g18670.1	PGP21, LOC_Os01g18670	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
LOC_Os01g52550.1	LOC_Os01g52550	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g74470.1	PGP20, LOC_Os01g74470	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os03g17180.1	PGP20, LOC_Os03g17180	subfamily ABCB transporter	0.07	OrthoFinder output from all 47 species
Len_g04845	PGP20	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
MA_18604g0010	PGP12	ABC transporter B family member 12 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_40328g0010	PGP20	ABC transporter B family member 20 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Mp2g06270.1	PGP20	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Mp7g04390.1	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Msp_g01686	PGP6	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g17749	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g03862	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g04820	PGP20	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g41658	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g01067	PGP6	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g04001	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g29797	PGP6	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006646	PGP20	subfamily ABCB transporter & original description: CDS=24-3872	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0809.g027741	PGP20	subfamily ABCB transporter & original description: CDS=203-3700	0.03	OrthoFinder output from all 47 species
Sam_g25355	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g27139	No alias	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Smo139408	PGP20	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Spa_g03247	ATPGP4, PGP4, ABCB4, MDR4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g18285	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g18839	ABCB19,...	subfamily ABCB transporter & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g26470	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g06138	PGP6	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g12815	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g35292	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e001258_P003	PGP20, Zm00001e001258	subfamily ABCB transporter	0.05	OrthoFinder output from all 47 species
Zm00001e018488_P001	PGP20, Zm00001e018488	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Zm00001e038462_P002	PGP20, Zm00001e038462	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Zm00001e041760_P001	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	HCCA
CC	GO:0000159	protein phosphatase type 2A complex	IEP	HCCA
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005096	GTPase activator activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
MF	GO:0019208	phosphatase regulator activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0019888	protein phosphatase regulator activity	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	120	383
IPR003439	ABC_transporter-like_ATP-bd	454	602

External Links

No external refs found!

Solyc04g010310.4.1 (PGP20, Solyc04g010310)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation