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  5. Solyc04g009420.3.1

Solyc04g009420.3.1 (Solyc04g009420)


Aliases : Solyc04g009420

Description : PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis thaliana (sp|q8vy52|ppd2_arath : 227.0)


Gene families : OG0006850 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006850_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g009420.3.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AT2G28605 No alias Photosystem II reaction center PsbP family protein 0.07 OrthoFinder output from all 47 species
Adi_g001537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g65663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G042500.1 Ceric.04G042500 not classified & original description: pacid=50630591... 0.09 OrthoFinder output from all 47 species
Dac_g37232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26628 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01022331001 No alias PsbP domain-containing protein 2, chloroplastic... 0.09 OrthoFinder output from all 47 species
MA_8140147g0010 No alias PsbP domain-containing protein 2, chloroplastic... 0.04 OrthoFinder output from all 47 species
Mp5g12900.1 No alias PsbP domain-containing protein 2, chloroplastic... 0.03 OrthoFinder output from all 47 species
Msp_g20785 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g10160 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g35950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18977 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0118.g021226 No alias not classified & original description: CDS=1234-2040 0.06 OrthoFinder output from all 47 species
Spa_g11797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10376 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e040897_P001 Zm00001e040897 PsbP domain-containing protein 2, chloroplastic... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0046422 violaxanthin de-epoxidase activity IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 86 239
No external refs found!