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  5. Solyc04g008910.3.1

Solyc04g008910.3.1 (Solyc04g008910)


Aliases : Solyc04g008910

Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana (sp|q9sd53|y3720_arath : 110.0)


Gene families : OG0000125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008910.3.1
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00162490 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT4G31980 No alias unknown protein; CONTAINS InterPro DOMAIN/s: Protein of... 0.05 OrthoFinder output from all 47 species
Ala_g06779 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13157.t1 Aspi01Gene13157 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_301279g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g14823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g21408 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g32233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50442 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g008920.1.1 Solyc04g008920 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g39969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004158 DUF247_pln 41 428
IPR004158 DUF247_pln 857 958
IPR004158 DUF247_pln 672 845
IPR004158 DUF247_pln 518 665
No external refs found!