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Aliases : Solyc04g008550
Description : C3H zinc finger transcription factor. regulatory component ZC11A of TREX/THO mRNP trafficking complex
Gene families : OG0001116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001116_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G02160 | No alias | CCCH-type zinc finger family protein | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g059322 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g075164 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene71063.t1 | Aspi01Gene71063 | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g13222 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.21G028800.1 | Ceric.21G028800 | regulatory protein *(ZC11A) of mRNA export & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.23G004600.1 | Ceric.23G004600 | regulatory protein *(ZC11A) of mRNA export & original... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g05770 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g24424 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01010243001 | No alias | RNA processing.messenger ribonucleoprotein particle... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_10712 | No alias | C3H zinc finger transcription factor. regulatory... | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g04207 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04919 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g04961 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.04 | OrthoFinder output from all 47 species | |
| Mp2g02990.1 | No alias | C3H zinc finger transcription factor. regulatory... | 0.07 | OrthoFinder output from all 47 species | |
| Ore_g17489 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g37675 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g09783 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g30352 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g28993 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0019.g007865 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17521 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Smo441325 | No alias | RNA processing.messenger ribonucleoprotein particle... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g49982 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g10549 | No alias | regulatory protein *(ZC11A) of mRNA export & original... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e023520_P001 | Zm00001e023520 | C3H zinc finger transcription factor. regulatory... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e041908_P001 | Zm00001e041908 | C3H zinc finger transcription factor. regulatory... | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003924 | GTPase activity | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| BP | GO:0006354 | DNA-templated transcription elongation | IEP | HCCA |
| BP | GO:0006368 | transcription elongation by RNA polymerase II | IEP | HCCA |
| CC | GO:0008023 | transcription elongation factor complex | IEP | HCCA |
| BP | GO:0008104 | protein localization | IEP | HCCA |
| BP | GO:0015031 | protein transport | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| CC | GO:0016593 | Cdc73/Paf1 complex | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0033036 | macromolecule localization | IEP | HCCA |
| BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
| BP | GO:0071702 | organic substance transport | IEP | HCCA |
| BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR041686 | Znf-CCCH_3 | 32 | 85 |
| No external refs found! |