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  5. Solyc04g008420.1.1

Solyc04g008420.1.1 (MS1, Solyc04g008420)


Aliases : MS1, Solyc04g008420

Description : MMD1/DUET meiotic recombination regulating protein. PHD finger transcription factor


Gene families : OG0003400 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003400_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008420.1.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00138p00035380 MMD1,... RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
GSVIVT01011588001 MS1 RNA biosynthesis.transcriptional activation.PHD finger... 0.16 OrthoFinder output from all 47 species
GSVIVT01030666001 MMD1 RNA biosynthesis.transcriptional activation.PHD finger... 0.08 OrthoFinder output from all 47 species
LOC_Os09g27620.1 MS1, LOC_Os09g27620 MMD1/DUET meiotic recombination regulating protein. PHD... 0.16 OrthoFinder output from all 47 species
Mp3g06700.1 MMD1 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Ore_g40819 MMD1 transcriptional regulator *(MS1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024273 MS1 transcriptional regulator *(MS1) & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s1844.g028194 MMD1 PHD finger transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g48354 No alias PHD finger transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e034314_P001 MS1, Zm00001e034314 MMD1/DUET meiotic recombination regulating protein. PHD... 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 623 669
No external refs found!