Aliases : RAD23-3, RAD23C, Solyc04g007120
Description : shuttle protein (RAD23)
Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc04g007120.4.1 | |
Cluster | HCCA: Cluster_77 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00156p00078120 | RAD23D,... | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica | 0.03 | OrthoFinder output from all 47 species | |
Adi_g106017 | RAD23B, RAD23 | ubiquitin-proteasome shuttle factor *(RAD23) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.13G041900.1 | RAD23B, RAD23,... | ubiquitin-proteasome shuttle factor *(RAD23) & original... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os09g24200.1 | RAD23D, LOC_Os09g24200 | shuttle protein (RAD23) | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g09383 | RAD23B, RAD23 | ubiquitin-proteasome shuttle factor *(RAD23) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g18647 | RAD23A | ubiquitin-proteasome shuttle factor *(RAD23) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g27319 | RAD23-3, RAD23C | ubiquitin-proteasome shuttle factor *(RAD23) & original... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g47590 | RAD23A | ubiquitin-proteasome shuttle factor *(RAD23) & original... | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g08630 | RAD23B, RAD23 | ubiquitin-proteasome shuttle factor *(RAD23) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g26899 | No alias | ubiquitin-proteasome shuttle factor *(RAD23) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g51716 | No alias | ubiquitin-proteasome shuttle factor *(RAD23) & original... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e034084_P002 | RAD23-3, RAD23C,... | shuttle protein (RAD23) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e036768_P002 | RAD23D, Zm00001e036768 | shuttle protein (RAD23) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003684 | damaged DNA binding | IEA | Interproscan |
MF | GO:0005515 | protein binding | IEA | Interproscan |
BP | GO:0006289 | nucleotide-excision repair | IEA | Interproscan |
BP | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000290 | deadenylation-dependent decapping of nuclear-transcribed mRNA | IEP | HCCA |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
MF | GO:0003857 | 3-hydroxyacyl-CoA dehydrogenase activity | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
BP | GO:0006631 | fatty acid metabolic process | IEP | HCCA |
MF | GO:0008047 | enzyme activator activity | IEP | HCCA |
MF | GO:0008483 | transaminase activity | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
MF | GO:0019842 | vitamin binding | IEP | HCCA |
MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
BP | GO:0043085 | positive regulation of catalytic activity | IEP | HCCA |
BP | GO:0044093 | positive regulation of molecular function | IEP | HCCA |
BP | GO:0044255 | cellular lipid metabolic process | IEP | HCCA |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0050790 | regulation of catalytic activity | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
BP | GO:0065009 | regulation of molecular function | IEP | HCCA |
MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
BP | GO:0110154 | RNA decapping | IEP | HCCA |
BP | GO:0110156 | methylguanosine-cap decapping | IEP | HCCA |
MF | GO:0140677 | molecular function activator activity | IEP | HCCA |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
No external refs found! |