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  5. Solyc04g006990.3.1

Solyc04g006990.3.1 (Solyc04g006990)


Aliases : Solyc04g006990

Description : transcription factor (bHLH)


Gene families : OG0001169 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001169_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g006990.3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G68810 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 OrthoFinder output from all 47 species
AT2G40200 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G41130 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.1 OrthoFinder output from all 47 species
AT3G25710 BHLH32, ATAIG1, TMO5 basic helix-loop-helix 32 0.04 OrthoFinder output from all 47 species
Aop_g36805 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g08102 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13418 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03913 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011960001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01020688001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01025747001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01032789001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
LOC_Os01g11910.1 LOC_Os01g11910 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os03g15440.1 LOC_Os03g15440 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os08g33590.1 LOC_Os08g33590 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
MA_65818g0010 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Msp_g11399 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23095 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17089 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g24888 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18354 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001119_P001 Zm00001e001119 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Zm00001e004145_P001 Zm00001e004145 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Zm00001e006132_P001 Zm00001e006132 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e009812_P001 Zm00001e009812 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e009972_P001 Zm00001e009972 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e016455_P001 BHLH32, ATAIG1,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e022445_P001 Zm00001e022445 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Zm00001e034395_P001 Zm00001e034395 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e038535_P001 Zm00001e038535 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 69 116
No external refs found!