1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g119050.4.1

Solyc03g119050.4.1 (MYB4R1, AtMYB4R1,...)


Aliases : MYB4R1, AtMYB4R1, Solyc03g119050

Description : component SNAPC4 of SNAP snRNA transcription factor complex


Gene families : OG0004801 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004801_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g119050.4.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Ala_g07038 MYB4R1, AtMYB4R1 R0R1R2R3-MYB transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g13969 MYB4R1, AtMYB4R1 R0R1R2R3-MYB transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_30719 MYB4R1, AtMYB4R1 component SNAPC4 of SNAP snRNA transcription factor... 0.03 OrthoFinder output from all 47 species
Mp1g24520.1 MYB4R1, AtMYB4R1 component SNAPC4 of SNAP snRNA transcription factor... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 295 388
IPR001005 SANT/Myb 569 610
No external refs found!