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  5. Solyc03g117260.2.1

Solyc03g117260.2.1 (Solyc03g117260)


Aliases : Solyc03g117260

Description : Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana (sp|p0c897|y3264_arath : 469.0)


Gene families : OG0000125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g117260.2.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00023p00153970 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00172000 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00169500 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G50150 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
Ala_g09322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g17823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26669 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08491.t1 Aspi01Gene08491 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49158.t1 Aspi01Gene49158 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03345 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g27578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035820001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_03494 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_08670 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_08678 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_20041 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_20970 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_23451 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_27805 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_28287 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_37279 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os01g38120.1 LOC_Os01g38120 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os05g15230.1 LOC_Os05g15230 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os08g42570.1 LOC_Os08g42570 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10332751g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10435738g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10436979g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_155516g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_64641g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ore_g19917 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g66698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20568 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g26636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32235 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018539 No alias not classified & original description: CDS=1-1374 0.03 OrthoFinder output from all 47 species
Solyc04g008900.4.1 Solyc04g008900 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc07g007010.1.1 Solyc07g007010 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g39969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e014020_P001 Zm00001e014020 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e023471_P002 Zm00001e023471 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e024232_P001 Zm00001e024232 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR004158 DUF247_pln 40 536
No external refs found!