Solyc03g116810.4.1 (Solyc03g116810)

Aliases : Solyc03g116810

Description : component SRP54 of SRP (signal recognition particle) complex

Gene families : OG0003514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003514_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g116810.4.1

Target	Alias	Description	ECC score	Gene Family Method
Ceric.01G080500.1	Ceric.01G080500	component *(SRP54) of SRP (signal recognition particle)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021254.24	No alias	Protein translocation.endoplasmic...	0.03	OrthoFinder output from all 47 species
Dcu_g01603	No alias	component *(SRP54) of SRP (signal recognition particle)...	0.03	OrthoFinder output from all 47 species
Gb_39090	No alias	component SRP54 of SRP (signal recognition particle) complex	0.05	OrthoFinder output from all 47 species
LOC_Os01g56600.1	LOC_Os01g56600	component SRP54 of SRP (signal recognition particle) complex	0.06	OrthoFinder output from all 47 species
Len_g02305	No alias	component *(SRP54) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
Mp1g19000.1	No alias	component SRP54 of SRP (signal recognition particle) complex	0.03	OrthoFinder output from all 47 species
Ppi_g03018	No alias	component *(SRP54) of SRP (signal recognition particle)...	0.02	OrthoFinder output from all 47 species
Spa_g11832	No alias	component *(SRP54) of SRP (signal recognition particle)...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008312	7S RNA binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
CC	GO:0048500	signal recognition particle	IEA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005047	signal recognition particle binding	IEP	HCCA
MF	GO:0005048	signal sequence binding	IEP	HCCA
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	HCCA
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000897	SRP54_GTPase_dom	101	296
IPR004125	Signal_recog_particle_SRP54_M	328	428
IPR013822	Signal_recog_particl_SRP54_hlx	6	83

External Links

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Solyc03g116810.4.1 (Solyc03g116810)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation