1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g116680.3.1

Solyc03g116680.3.1 (MBD11, ATMBD11, Solyc03g116680)


Aliases : MBD11, ATMBD11, Solyc03g116680

Description : methylation reader (MBD10-11)


Gene families : OG0000919 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000919_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g116680.3.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g060317 MBD10 methylation reader *(MBD10-11) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12613.t1 Aspi01Gene12613 methylation reader *(MBD10-11) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63346.t1 Aspi01Gene63346 methylation reader *(MBD10-11) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g21285 No alias methylation reader *(MBD10-11) & original description: none 0.02 OrthoFinder output from all 47 species
MA_46923g0010 MBD10 methylation reader (MBD10-11) 0.03 OrthoFinder output from all 47 species
Zm00001e012390_P001 MBD11, ATMBD11,... methylation reader (MBD10-11) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004860 protein kinase inhibitor activity IEP HCCA
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019210 kinase inhibitor activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 6 70
No external refs found!