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  5. Solyc03g116230.4.1

Solyc03g116230.4.1 (HEL, PR4, PR-4, Solyc03g116230)


Aliases : HEL, PR4, PR-4, Solyc03g116230

Description : Chitin-binding lectin 1 OS=Solanum tuberosum (sp|q9s8m0|lect_soltu : 154.0)


Gene families : OG0000280 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000280_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g116230.4.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00243570 HCHIB, B-CHI,... Basic 30 kDa endochitinase OS=Solanum lycopersicum 0.02 OrthoFinder output from all 47 species
AT2G43610 No alias Chitinase family protein 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000746 ATEP3, EP3,... not classified & original description: CDS=491-1327 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000750 ATEP3, EP3,... not classified & original description: CDS=1-942 0.02 OrthoFinder output from all 47 species
MA_10431378g0010 ATEP3, EP3,... Chitinase 4 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_10431378g0020 ATEP3, EP3,... Chitinase 6 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_18470g0010 HCHIB, B-CHI,... Basic endochitinase C OS=Secale cereale... 0.02 OrthoFinder output from all 47 species
MA_18470g0020 HCHIB, B-CHI,... Endochitinase A2 OS=Pisum sativum (sp|p21226|chi2_pea : 201.0) 0.02 OrthoFinder output from all 47 species
MA_9682123g0010 ATEP3, EP3,... Chitinase 4 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Pp3c1_30410V3.1 Pp3c1_30410 chitinase, putative 0.01 OrthoFinder output from all 47 species
Smo138230 CHI No description available 0.02 OrthoFinder output from all 47 species
Solyc10g055780.1.1 HCHIB, B-CHI,... Endochitinase B OS=Nicotiana tabacum... 0.04 OrthoFinder output from all 47 species
Solyc10g074440.2.1 HCHIB, B-CHI,... Endochitinase OS=Solanum tuberosum (sp|p05315|chit_soltu : 491.0) 0.03 OrthoFinder output from all 47 species
Solyc10g074460.3.1 HCHIB, B-CHI,... Endochitinase OS=Solanum tuberosum (sp|p05315|chit_soltu : 219.0) 0.02 OrthoFinder output from all 47 species
Solyc11g020130.3.1 Solyc11g020130 Chitin-binding lectin 1 OS=Solanum tuberosum... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008061 chitin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR001002 Chitin-bd_1 49 88
IPR001002 Chitin-bd_1 233 271
IPR001002 Chitin-bd_1 130 167
IPR001002 Chitin-bd_1 96 133
No external refs found!