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  5. Solyc03g115920.3.1

Solyc03g115920.3.1 (Solyc03g115920)


Aliases : Solyc03g115920

Description : plant-specific E3 ubiquitin ligase (RSL/RFA)


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc03g115920.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00129p00116540 evm_27.TU.AmTr_v1... Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Aev_g40090 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g05649 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01016055001 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.03 OrthoFinder output from all 47 species
GSVIVT01026257001 No alias Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os09g25200.1 LOC_Os09g25200 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.05 OrthoFinder output from all 47 species
MA_10123705g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 OrthoFinder output from all 47 species
Smo48392 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.07 OrthoFinder output from all 47 species
Solyc03g117860.3.1 Solyc03g117860 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 210 260
IPR002867 IBR_dom 147 193
No external refs found!