Solyc03g113740.4.1 (CDC23, APC8, Solyc03g113740)

Aliases : CDC23, APC8, Solyc03g113740

Description : component APC8 of (APC/C)-dependent ubiquitination arc lamp subcomplex

Gene families : OG0005671 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005671_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g113740.4.1

Target	Alias	Description	ECC score	Gene Family Method
Ala_g16427	CDC23, APC8	component *(APC8) of (APC/C)-dependent ubiquitination...	0.02	OrthoFinder output from all 47 species
Aspi01Gene70021.t1	CDC23, APC8,...	component *(APC8) of (APC/C)-dependent ubiquitination...	0.04	OrthoFinder output from all 47 species
Azfi_s0032.g024796	CDC23, APC8	component *(APC8) of (APC/C)-dependent ubiquitination...	0.03	OrthoFinder output from all 47 species
Dcu_g01683	CDC23, APC8	component *(APC8) of (APC/C)-dependent ubiquitination...	0.04	OrthoFinder output from all 47 species
LOC_Os02g43920.1	CDC23, APC8,...	component APC8 of (APC/C)-dependent ubiquitination arc...	0.05	OrthoFinder output from all 47 species
Pir_g18807	CDC23, APC8	component *(APC8) of (APC/C)-dependent ubiquitination...	0.02	OrthoFinder output from all 47 species
Ppi_g18743	CDC23, APC8	component *(APC8) of (APC/C)-dependent ubiquitination...	0.03	OrthoFinder output from all 47 species
Zm00001e015323_P003	CDC23, APC8,...	component APC8 of (APC/C)-dependent ubiquitination arc...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
CC	GO:0000152	nuclear ubiquitin ligase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005680	anaphase-promoting complex	IEA	Interproscan
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0030071	regulation of mitotic metaphase/anaphase transition	IEA	Interproscan
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	None	Extended
BP	GO:0033045	regulation of sister chromatid segregation	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0051983	regulation of chromosome segregation	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901987	regulation of cell cycle phase transition	None	Extended
BP	GO:1901990	regulation of mitotic cell cycle phase transition	None	Extended
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019734	TPR_repeat	343	374
IPR019734	TPR_repeat	482	514
IPR007192	APC8	7	161

External Links

No external refs found!

Solyc03g113740.4.1 (CDC23, APC8, Solyc03g113740)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation