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  5. Solyc03g113630.3.1

Solyc03g113630.3.1 (PTAC2, Solyc03g113630)


Aliases : PTAC2, Solyc03g113630

Description : PAP2/TAC2 cofactor of plastid-encoded RNA polymerase


Gene families : OG0008467 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008467_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc03g113630.3.1
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AT1G74850 PTAC2 plastid transcriptionally active 2 0.06 OrthoFinder output from all 47 species
Adi_g008223 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.04 OrthoFinder output from all 47 species
Adi_g067227 SVR7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01158 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species
Ceric.39G041000.1 PTAC2, Ceric.39G041000 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species
Dcu_g05755 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
GSVIVT01007844001 PTAC2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.09 OrthoFinder output from all 47 species
LOC_Os03g60910.1 PTAC2, LOC_Os03g60910 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
Lfl_g06742 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
MA_140582g0010 PTAC2 Pentatricopeptide repeat-containing protein At1g74850,... 0.03 OrthoFinder output from all 47 species
Mp7g11380.1 PTAC2 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Ore_g06175 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.02 OrthoFinder output from all 47 species
Tin_g27885 PTAC2 cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)... 0.03 OrthoFinder output from all 47 species
Zm00001e035964_P003 PTAC2, Zm00001e035964 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 438 498
IPR002885 Pentatricopeptide_repeat 229 289
IPR002885 Pentatricopeptide_repeat 666 694
IPR002885 Pentatricopeptide_repeat 132 163
IPR002885 Pentatricopeptide_repeat 310 356
IPR002885 Pentatricopeptide_repeat 384 428
IPR002885 Pentatricopeptide_repeat 170 218
IPR002885 Pentatricopeptide_repeat 524 568
No external refs found!