1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g112630.3.1

Solyc03g112630.3.1 (Solyc03g112630)


Aliases : Solyc03g112630

Description : Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana (sp|q9m0n1|pux10_arath : 246.0)


Gene families : OG0003017 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003017_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g112630.3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00184390 evm_27.TU.AmTr_v1... Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Pnu_g26164 No alias substrate-to-CDC48 bridging factor *(PUX10) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010519 No alias not classified & original description: CDS=1-1575 0.02 OrthoFinder output from all 47 species
Zm00001e034488_P001 Zm00001e034488 Plant UBX domain-containing protein 10 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Zm00001e039145_P002 Zm00001e039145 Plant UBX domain-containing protein 10 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001012 UBX_dom 350 426
No external refs found!