Solyc03g111380.3.1 (TUBG1, Solyc03g111380)

Aliases : TUBG1, Solyc03g111380

Description : gamma tubulin component TUG1 of gamma-Tubulin ring complex (gamma-TuRC)

Gene families : OG0003561 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003561_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g111380.3.1
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AT3G61650	TUBG1	gamma-tubulin	0.09	OrthoFinder output from all 47 species
Aop_g07894	TUBG1	gamma tubulin component *(TUG1) of gamma-Tubulin ring...	0.04	OrthoFinder output from all 47 species
Azfi_s0003.g007580	TUBG1	gamma tubulin component *(TUG1) of gamma-Tubulin ring...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.121	TUBG1	Tubulin gamma chain OS=Physcomitrella patens subsp. patens	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.122	TUBG2, ATGCP2, GCP2	Tubulin gamma chain OS=Physcomitrella patens subsp. patens	0.05	OrthoFinder output from all 47 species
Cre06.g299300	TUBG1	Cytoskeleton.microtubular network.microtubule Tubulin...	0.03	OrthoFinder output from all 47 species
Dac_g00805	TUBG1	gamma tubulin component *(TUG1) of gamma-Tubulin ring...	0.02	OrthoFinder output from all 47 species
GSVIVT01027050001	TUBG1	Cytoskeleton.microtubular network.microtubule Tubulin...	0.03	OrthoFinder output from all 47 species
Mp7g00700.1	TUBG1	gamma tubulin component TUG1 of gamma-Tubulin ring...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017622	TUBG1	gamma tubulin component *(TUG1) of gamma-Tubulin ring...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0042162	telomeric DNA binding	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003008	Tubulin_FtsZ_GTPase	4	214
IPR018316	Tubulin/FtsZ_2-layer-sand-dom	264	393

External Links

No external refs found!

Solyc03g111380.3.1 (TUBG1, Solyc03g111380)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation