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  5. Solyc03g097000.3.1

Solyc03g097000.3.1 (EMB976, Solyc03g097000)


Aliases : EMB976, Solyc03g097000

Description : Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana (sp|o04647|pp399_arath : 1035.0)


Gene families : OG0007469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g097000.3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00132600 EMB976,... Pentatricopeptide repeat-containing protein At5g27270... 0.06 OrthoFinder output from all 47 species
AT5G27270 EMB976 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g059643 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07260 No alias plastidial splicing factor *(PDM4) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G008200.1 EMB976, Ceric.11G008200 plastidial splicing factor *(PDM4) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g11292 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01024409001 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.11 OrthoFinder output from all 47 species
Gb_15749 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
LOC_Os06g02120.1 EMB976, LOC_Os06g02120 Pentatricopeptide repeat-containing protein At5g27270... 0.06 OrthoFinder output from all 47 species
Mp1g22180.1 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
Ore_g41040 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51412 No alias plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008184 glycogen phosphorylase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 186 235
IPR002885 Pentatricopeptide_repeat 774 819
IPR002885 Pentatricopeptide_repeat 878 926
IPR033443 PPR_long 260 412
IPR033443 PPR_long 416 499
IPR002885 Pentatricopeptide_repeat 988 1012
IPR002885 Pentatricopeptide_repeat 642 666
IPR002885 Pentatricopeptide_repeat 952 975
IPR002885 Pentatricopeptide_repeat 847 876
No external refs found!