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  5. Solyc03g082990.3.1

Solyc03g082990.3.1 (Solyc03g082990)


Aliases : Solyc03g082990

Description : RNA editing factor (WTG1)


Gene families : OG0007779 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007779_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g082990.3.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g05456 No alias RNA editing co-factor *(WTG1) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.18G000700.1 Ceric.18G000700 RNA editing co-factor *(WTG1) & original description:... 0.06 OrthoFinder output from all 47 species
Dcu_g01835 No alias RNA editing co-factor *(WTG1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09149 No alias RNA editing co-factor *(WTG1) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04785 No alias RNA editing co-factor *(WTG1) & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g17440.1 No alias RNA editing factor (WTG1) 0.03 OrthoFinder output from all 47 species
Mp6g20350.1 No alias RNA editing factor (WTG1) 0.06 OrthoFinder output from all 47 species
Sam_g24646 No alias RNA editing co-factor *(WTG1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019734 TPR_repeat 319 352
No external refs found!