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Aliases : ATPAL2, PAL2, Solyc03g078280
Description : Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum (sp|p31425|pal1_soltu : 442.0) & Enzyme classification.EC_4 lyases.EC_4.3 carbon-nitrogen lyase(50.4.3 : 275.2)
Gene families : OG0000270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000270_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc03g078280.3.1 | |
| Cluster | HCCA: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00032p00159210 | PAL4,... | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.03 | OrthoFinder output from all 47 species | |
| AT2G37040 | ATPAL1, PAL1 | PHE ammonia lyase 1 | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g005788 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g014959 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g018721 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g107906 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g01488 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g37161 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g27204 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene18088.t1 | ATPAL1, PAL1,... | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene18089.t1 | ATPAL1, PAL1,... | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene25481.t1 | PAL4, Aspi01Gene25481 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0096.g043679 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2310 | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.14G035200.1 | PAL4, Ceric.14G035200 | EC_4.3 carbon-nitrogen lyase & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g08202 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g24302 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g35691 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g18475 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01024292001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01024293001 | ATPAL1, PAL1 | Enzyme classification.EC_4 lyases.EC_4.3 carbon-nitrogen... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01024294001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01024299001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01024306001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01024315001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_04830 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g41650.3 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g41670.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os02g41680.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os05g35290.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| MA_73113g0010 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g05190.1 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Mp3g18570.1 | PAL4 | Enzyme classification.EC_4 lyases.EC_4.3 carbon-nitrogen... | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g14210.1 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Mp7g14880.1 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g08420 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c17_7320V3.1 | Pp3c17_7320 | No annotation | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g57238 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0017.g007129 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2310 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0067.g016271 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2382 | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g03458 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e023031_P002 | PAL4, Zm00001e023031 | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | HCCA |
| MF | GO:0008061 | chitin binding | IEP | HCCA |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | HCCA |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| No external refs found! |