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Aliases : Solyc03g071570
Description : pectate lyase
Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00078p00106380 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00120p00111300 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.09 | OrthoFinder output from all 47 species | |
| AT1G04680 | No alias | Pectin lyase-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT1G67750 | No alias | Pectate lyase family protein | 0.02 | OrthoFinder output from all 47 species | |
| AT2G02720 | No alias | Pectate lyase family protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G07010 | No alias | Pectin lyase-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT3G27400 | No alias | Pectin lyase-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G53190 | No alias | Pectin lyase-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT5G04310 | No alias | Pectin lyase-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Als_g10720 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g21580 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene17935.t1 | Aspi01Gene17935 | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011291 | No alias | EC_4.2 carbon-oxygen lyase & original description: CDS=272-1573 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0054.g033628 | RHS14 | EC_4.2 carbon-oxygen lyase & original description: CDS=168-1388 | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.30G051200.1 | RHS14, Ceric.30G051200 | EC_4.2 carbon-oxygen lyase & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g11741 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g12057 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g43009 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01000592001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01016209001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.01 | OrthoFinder output from all 47 species | |
| GSVIVT01029048001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01033671001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| Gb_02248 | No alias | pectate lyase | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g05050.1 | LOC_Os04g05050 | pectate lyase | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os06g38510.2 | LOC_Os06g38510 | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os10g31910.1 | LOC_Os10g31910 | pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| Len_g13617 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g50589 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g26214 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g26215 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g41165 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g27506 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g05797 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g058890.4.1 | AT59, Solyc03g058890 | pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| Solyc05g007080.4.1 | AT59, Solyc05g007080 | pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| Solyc06g071840.3.1 | Solyc06g071840 | Probable pectate lyase 22 OS=Arabidopsis thaliana... | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g06272 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g47003 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g07726 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g09317 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e004654_P002 | Zm00001e004654 | pectate lyase | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e024959_P001 | AT59, Zm00001e024959 | pectate lyase | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e037311_P001 | Zm00001e037311 | pectate lyase | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | HCCA |
| BP | GO:0000271 | polysaccharide biosynthetic process | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | HCCA |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | HCCA |
| MF | GO:0004672 | protein kinase activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | HCCA |
| BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | HCCA |
| BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
| BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009250 | glucan biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| BP | GO:0016310 | phosphorylation | IEP | HCCA |
| MF | GO:0016409 | palmitoyltransferase activity | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | HCCA |
| BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | HCCA |
| MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0051273 | beta-glucan metabolic process | IEP | HCCA |
| BP | GO:0051274 | beta-glucan biosynthetic process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| CC | GO:0098797 | plasma membrane protein complex | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 160 | 343 |
| No external refs found! |