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  5. Solyc03g063200.3.1

Solyc03g063200.3.1 (Solyc03g063200)


Aliases : Solyc03g063200

Description : C3H zinc finger transcription factor


Gene families : OG0000799 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000799_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g063200.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00176740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
AMTR_s00149p00054910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
AT5G06770 No alias KH domain-containing protein / zinc finger (CCCH type)... 0.04 OrthoFinder output from all 47 species
Adi_g036602 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.04 OrthoFinder output from all 47 species
Adi_g058620 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.03 OrthoFinder output from all 47 species
Aev_g09670 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.03 OrthoFinder output from all 47 species
Ala_g09822 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.04 OrthoFinder output from all 47 species
Aob_g17753 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.04 OrthoFinder output from all 47 species
Aop_g09881 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.03 OrthoFinder output from all 47 species
Aop_g63082 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.05 OrthoFinder output from all 47 species
Aspi01Gene55981.t1 Aspi01Gene55981 regulatory protein *(KHZ) of autonomous floral-promotion... 0.03 OrthoFinder output from all 47 species
Aspi01Gene62023.t1 Aspi01Gene62023 regulatory protein *(KHZ) of autonomous floral-promotion... 0.03 OrthoFinder output from all 47 species
Azfi_s0102.g044457 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.02 OrthoFinder output from all 47 species
Ceric.06G062700.1 Ceric.06G062700 regulatory protein *(KHZ) of autonomous floral-promotion... 0.04 OrthoFinder output from all 47 species
Ceric.21G054400.1 Ceric.21G054400 regulatory protein *(KHZ) of autonomous floral-promotion... 0.04 OrthoFinder output from all 47 species
Dcu_g19603 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.03 OrthoFinder output from all 47 species
Dcu_g24226 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.06 OrthoFinder output from all 47 species
GSVIVT01025360001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
LOC_Os02g10080.1 LOC_Os02g10080 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
MA_159838g0010 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
MA_26803g0010 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
MA_68032g0010 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Msp_g10999 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.05 OrthoFinder output from all 47 species
Pnu_g11706 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.02 OrthoFinder output from all 47 species
Pnu_g27984 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.04 OrthoFinder output from all 47 species
Pnu_g33569 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0150.g023328 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.02 OrthoFinder output from all 47 species
Sam_g49614 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.02 OrthoFinder output from all 47 species
Tin_g16952 No alias regulatory protein *(KHZ) of autonomous floral-promotion... 0.03 OrthoFinder output from all 47 species
Zm00001e030509_P002 Zm00001e030509 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 91 116
IPR000571 Znf_CCCH 247 271
IPR004088 KH_dom_type_1 156 219
No external refs found!