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  5. Solyc03g058350.4.1

Solyc03g058350.4.1 (Solyc03g058350)


Aliases : Solyc03g058350

Description : Met-tRNA positioning component eIF5B of initiator tRNA carrier complex


Gene families : OG0003112 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003112_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g058350.4.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02879p00004340 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G21160 No alias eukaryotic translation initiation factor 2 (eIF-2) family protein 0.07 OrthoFinder output from all 47 species
Adi_g012011 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Aev_g37468 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Ala_g02700 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Aop_g35971 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Ceric.31G051600.1 Ceric.31G051600 Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
GSVIVT01034895001 No alias Protein biosynthesis.translation initiation.eIF5B... 0.07 OrthoFinder output from all 47 species
Gb_28583 No alias Met-tRNA positioning component eIF5B of initiator tRNA... 0.01 OrthoFinder output from all 47 species
LOC_Os05g51500.1 LOC_Os05g51500 Met-tRNA positioning component eIF5B of initiator tRNA... 0.12 OrthoFinder output from all 47 species
Ore_g33223 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Sam_g25594 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Spa_g56625 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Zm00001e026670_P001 Zm00001e026670 Met-tRNA positioning component eIF5B of initiator tRNA... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 567 776
IPR023115 TIF_IF2_dom3 903 1005
IPR004161 EFTu-like_2 803 881
No external refs found!