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  5. Solyc03g033900.1.1

Solyc03g033900.1.1 (AGL57, Solyc03g033900)


Aliases : AGL57, Solyc03g033900

Description : transcription factor (MADS/AGL)


Gene families : OG0011442 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011442_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g033900.1.1
Cluster HCCA: Cluster_316

Target Alias Description ECC score Gene Family Method Actions
Solyc03g033930.1.1 Solyc03g033930 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc03g033940.1.1 AGL57, Solyc03g033940 transcription factor (MADS/AGL) 0.2 OrthoFinder output from all 47 species
Solyc03g034260.1.1 AGL91, Solyc03g034260 transcription factor (MADS/AGL) 0.08 OrthoFinder output from all 47 species
Solyc10g050950.1.1 Solyc10g050950 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 16 63
No external refs found!