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  5. Solyc03g019800.4.1

Solyc03g019800.4.1 (Solyc03g019800)


Aliases : Solyc03g019800

Description : transcription termination factor (TTF1). transcription factor (MYB-related)


Gene families : OG0003814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g019800.4.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT5G41020 No alias myb family transcription factor 0.05 OrthoFinder output from all 47 species
Ala_g06766 No alias transcription termination factor *(TTF1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.38G041200.1 Ceric.38G041200 transcription termination factor *(TTF1) & original... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.31 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Dac_g38685 No alias transcription termination factor *(TTF1) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g48895 No alias transcription termination factor *(TTF1) & original... 0.04 OrthoFinder output from all 47 species
Gb_06266 No alias transcription termination factor (TTF1). transcription... 0.04 OrthoFinder output from all 47 species
LOC_Os06g19980.1 LOC_Os06g19980 transcription termination factor (TTF1). transcription... 0.06 OrthoFinder output from all 47 species
MA_10431881g0010 No alias transcription termination factor (TTF1). transcription... 0.05 OrthoFinder output from all 47 species
Smo419617 AtMYB50, MYB50 RNA biosynthesis.transcriptional activation.MYB... 0.07 OrthoFinder output from all 47 species
Zm00001e021684_P001 Zm00001e021684 transcription termination factor (TTF1). transcription... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!