Solyc03g019710.3.1 (SHP2, AGL5, Solyc03g019710)

Aliases : SHP2, AGL5, Solyc03g019710

Description : transcription factor (MADS/AGL)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g019710.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00266470	SOC1, AGL20,...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
AMTR_s00109p00015260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT4G24540	AGL24	AGAMOUS-like 24	0.03	OrthoFinder output from all 47 species
AT5G51870	AGL71	AGAMOUS-like 71	0.04	OrthoFinder output from all 47 species
Als_g29896	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g12233	AGL30	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene15816.t1	SOC1, AGL20,...	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene17808.t1	AGL21, Aspi01Gene17808	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene17817.t1	AGL6, Aspi01Gene17817	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44620.t2	AGL6, Aspi01Gene44620	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0684.g082058	AGL21	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.12G052200.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g25491	AGL8, FUL	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g30254	AGL79	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01008560001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01037022001	AGL62	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
Gb_19897	AGL16	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
LOC_Os02g01355.1	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Lfl_g14037	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g33207	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g36451	AGL6	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_121040g0010	AGL3, SEP4	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_16629g0010	ANR1, AGL44	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_1767g0010	AGL66	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_333471g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_412147g0010	SOC1, AGL20, ATSOC1	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_78010g0010	SHP2, AGL5	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Msp_g08479	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g43916	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g21068	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g62136	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g36311	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g48749	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g065730.2.1	AGL8, FUL, Solyc02g065730	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Solyc05g012020.4.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc05g015730.1.1	FLC, AGL25, FLF,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc06g059970.4.1	PI, Solyc06g059970	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc06g069430.3.1	AGL8, FUL, Solyc06g069430	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e015924_P003	SVP, AGL22,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e018811_P001	AGL14, Zm00001e018811	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0008061	chitin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	85	160

External Links

No external refs found!

Solyc03g019710.3.1 (SHP2, AGL5, Solyc03g019710)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation