1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g007460.3.1

Solyc03g007460.3.1 (CRF4, Solyc03g007460)


Aliases : CRF4, Solyc03g007460

Description : transcription factor (ERF)


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g007460.3.1
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00266920 RAP2.11,... External stimuli response.biotic... 0.05 OrthoFinder output from all 47 species
AMTR_s00009p00148470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00240320 LEP,... Ethylene-responsive transcription factor FZP OS=Oryza... 0.02 OrthoFinder output from all 47 species
AMTR_s00016p00092590 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
AMTR_s00058p00066390 RAP2.11,... External stimuli response.biotic... 0.01 OrthoFinder output from all 47 species
AT1G12890 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G44830 No alias Integrase-type DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
AT4G13620 No alias Integrase-type DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G25810 tny Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G65130 No alias Integrase-type DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g008628 DEAR1, CEJ1, ATERF#011 subgroup ERF-II transcription factor *(ERF19/20) &... 0.02 OrthoFinder output from all 47 species
Adi_g035511 ERF110 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056328 No alias subgroup ERF-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g097717 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g02077 No alias subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aev_g21334 tny subgroup ERF-III transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ala_g12877 CRF3 subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g18871 No alias subgroup ERF-X transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Als_g10832 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g26687 No alias subgroup ERF-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22889 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.01 OrthoFinder output from all 47 species
Aop_g25492 DEAR1, CEJ1, ATERF#011 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g32772 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g36216 DREB26 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene07338.t1 Aspi01Gene07338 subgroup ERF-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17529.t1 RAP2.11, Aspi01Gene17529 transcription factor *(ERN1) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene24329.t1 Aspi01Gene24329 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene24330.t1 Aspi01Gene24330 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene25575.t1 DEAR1, CEJ1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29233.t1 Rap2.6L, Aspi01Gene29233 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34452.t1 DEAR2, Aspi01Gene34452 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34481.t1 Aspi01Gene34481 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene41926.t1 RAP2.11, Aspi01Gene41926 transcription factor *(ERN1) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene48784.t1 Aspi01Gene48784 cutin and suberin biosynthesis transcription factor... 0.02 OrthoFinder output from all 47 species
Aspi01Gene56616.t1 DEAR3, Aspi01Gene56616 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene56617.t1 DEAR2, Aspi01Gene56617 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56618.t1 DEAR2, Aspi01Gene56618 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene56619.t1 RAP2.1, Aspi01Gene56619 not classified & original description: none 0.2 OrthoFinder output from all 47 species
Aspi01Gene57065.t1 ATERF12, ERF12,... subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene65343.t1 Aspi01Gene65343 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65353.t1 Aspi01Gene65353 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene67784.t1 ERF-1, ATERF-1,... subgroup ERF-IX transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene70904.t1 Aspi01Gene70904 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70907.t1 Aspi01Gene70907 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000553 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0002.g001536 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0075.g037615 No alias subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Azfi_s0205.g057738 No alias subgroup ERF-I transcription factor & original... 0.04 OrthoFinder output from all 47 species
Ceric.06G023400.1 Ceric.06G023400 subgroup ERF-I transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.08G029900.1 Ceric.08G029900 not classified & original description: pacid=50638924... 0.03 OrthoFinder output from all 47 species
Ceric.10G055400.1 Ceric.10G055400 not classified & original description: pacid=50611842... 0.02 OrthoFinder output from all 47 species
Ceric.13G085000.1 Ceric.13G085000 subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ceric.13G085200.1 Ceric.13G085200 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.13G085300.1 Ceric.13G085300 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.13G085400.1 Ceric.13G085400 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.15G043700.1 HRE2, Ceric.15G043700 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Ceric.27G015600.1 DEAR1, CEJ1,... not classified & original description: pacid=50605746... 0.07 OrthoFinder output from all 47 species
Ceric.28G005200.1 DEAR1, CEJ1,... subgroup ERF-II transcription factor *(ERF19/20) &... 0.04 OrthoFinder output from all 47 species
Ceric.28G014900.1 Ceric.28G014900 subgroup ERF-I transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.30G046500.1 Ceric.30G046500 not classified & original description: pacid=50609571... 0.02 OrthoFinder output from all 47 species
Ceric.30G046700.1 RAP2.1, Ceric.30G046700 not classified & original description: pacid=50607939... 0.02 OrthoFinder output from all 47 species
Ceric.31G058400.1 TINY2, Ceric.31G058400 subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ceric.37G041600.1 RAP2.6, Ceric.37G041600 not classified & original description: pacid=50615741... 0.02 OrthoFinder output from all 47 species
Dac_g38440 RAP2.11 transcription factor *(ERN1) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g15881 PUCHI subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dcu_g19756 TINY2 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g00294 ATERF3, ERF3 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g38194 No alias subgroup ERF-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g11833 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.01 OrthoFinder output from all 47 species
Ehy_g14116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20228 ATERF3, ERF3 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ehy_g27325 No alias subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.02 OrthoFinder output from all 47 species
Ehy_g30923 DREB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014291001 ATERF4, RAP2.5,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01022076001 DEAR3 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01025461001 RAP2.11 External stimuli response.biotic... 0.04 OrthoFinder output from all 47 species
GSVIVT01033793001 HRD RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
LOC_Os01g10370.1 tny, LOC_Os01g10370 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g05590.1 LOC_Os03g05590 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os06g09790.1 ORA47, LOC_Os06g09790 Ethylene-responsive transcription factor ERF018... 0.2 OrthoFinder output from all 47 species
LOC_Os07g42510.1 RAP2.12, LOC_Os07g42510 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os07g47330.1 PUCHI, LOC_Os07g47330 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os10g25170.1 RAP2.2, LOC_Os10g25170 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os12g41060.1 LOC_Os12g41060 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g08670 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Len_g19111 No alias subgroup ERF-III transcription factor & original... 0.06 OrthoFinder output from all 47 species
Lfl_g06071 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Lfl_g16995 No alias cutin and suberin biosynthesis transcription factor... 0.02 OrthoFinder output from all 47 species
Lfl_g24881 RAP2.11 transcription factor *(ERN1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_904750g0010 No alias transcription factor (DREB) 0.17 OrthoFinder output from all 47 species
MA_938274g0010 ERF-1, ATERF-1 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Mp4g22290.1 No alias transcription factor (DREB) 0.04 OrthoFinder output from all 47 species
Msp_g07037 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.01 OrthoFinder output from all 47 species
Msp_g09426 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g12944 ERF72, EBP, ATEBP, RAP2.3 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Ore_g03908 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ore_g03958 TINY2 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ore_g26909 RAP2.11 transcription factor *(ERN1) & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g28443 RAP2.11 transcription factor *(ERN1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28444 ATERF12, ERF12 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g25005 No alias subgroup ERF-IX transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g47937 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pir_g51435 CBF4, DREB1D transcription factor *(CBF/DREB1) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g05879 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18571 AtERF48, DREB2C subgroup ERF-IV/DREB2 transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ppi_g63803 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012223 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012398 DEAR1, CEJ1, ATERF#011 not classified & original description: CDS=1-1134 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0184.g024985 CRF3 subgroup ERF-VI transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0228.g026387 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.01 OrthoFinder output from all 47 species
Solyc01g065980.4.1 ERF72, EBP,... transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Solyc11g011750.1.1 ERF1, ATERF1,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Spa_g22128 PUCHI subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Tin_g23712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003579_P001 Zm00001e003579 Ethylene-responsive transcription factor ERF015... 0.01 OrthoFinder output from all 47 species
Zm00001e006753_P003 RAP2.9, DEAR5,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e014413_P001 Zm00001e014413 transcription factor (DREB) 0.07 OrthoFinder output from all 47 species
Zm00001e014415_P001 TINY2, Zm00001e014415 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e015314_P001 ERF5, ATERF-5,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e024669_P001 ERF110, Zm00001e024669 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e027350_P001 ATERF12, ERF12,... transcription factor (ERF) 0.04 OrthoFinder output from all 47 species
Zm00001e032434_P001 ERF-1, ATERF-1,... transcription factor (ERF) 0.04 OrthoFinder output from all 47 species
Zm00001e034661_P001 ERF110, Zm00001e034661 Ethylene-responsive transcription factor ERF115... 0.01 OrthoFinder output from all 47 species
Zm00001e034741_P001 RAP2.11, Zm00001e034741 transcription factor (ERF). transcription factor (ERN1) 0.04 OrthoFinder output from all 47 species
Zm00001e035811_P001 PUCHI, Zm00001e035811 transcription factor (ERF) 0.04 OrthoFinder output from all 47 species
Zm00001e041815_P001 Zm00001e041815 transcription factor (ERF) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 128 177
No external refs found!