Solyc03g007370.3.1 (ATSIG5, SIG5, SIGE,...)

Aliases : ATSIG5, SIG5, SIGE, Solyc03g007370

Description : basal transcription factor (Sigma)

Gene families : OG0006267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006267_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g007370.3.1
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00015p00252960	ATSIG5, SIG5,...	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
AMTR_s00015p00253000	ATSIG5, SIG5,...	RNA polymerase sigma factor sigE,...	0.03	OrthoFinder output from all 47 species
AT5G24120	ATSIG5, SIG5, SIGE	sigma factor E	0.12	OrthoFinder output from all 47 species
Als_g20817	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene21613.t1	ATSIG5, SIG5,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g23756	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.02G065100.1	ATSIG5, SIG5,...	basal Sigma-type transcription factor & original...	0.07	OrthoFinder output from all 47 species
Dac_g17058	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g26757	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01028717001	ATSIG5, SIG5, SIGE	RNA biosynthesis.organelle...	0.06	OrthoFinder output from all 47 species
Gb_40730	ATSIG5, SIG5, SIGE	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
LOC_Os05g50930.1	ATSIG5, SIG5,...	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
Mp3g02240.1	ATSIG5, SIG5, SIGE	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
Msp_g47380	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Ppi_g42839	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g19097	No alias	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Smo147096	ATSIG5, SIG5, SIGE	RNA biosynthesis.organelle...	0.07	OrthoFinder output from all 47 species
Tin_g20273	ATSIG5, SIG5, SIGE	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Zm00001e032596_P002	ATSIG5, SIG5,...	basal transcription factor (Sigma)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0015035	protein-disulfide reductase activity	IEP	HCCA
MF	GO:0015036	disulfide oxidoreductase activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007624	RNA_pol_sigma70_r3	236	277
IPR007624	RNA_pol_sigma70_r3	366	433
IPR007627	RNA_pol_sigma70_r2	282	350
IPR007630	RNA_pol_sigma70_r4	451	504

External Links

No external refs found!

Solyc03g007370.3.1 (ATSIG5, SIG5, SIGE,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation