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  5. Solyc03g006590.3.1

Solyc03g006590.3.1 (Solyc03g006590)


Aliases : Solyc03g006590

Description : no hits & (original description: none)


Gene families : OG0002532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002532_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g006590.3.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00259750 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00071p00180350 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT4G28170 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
Aspi01Gene01766.t1 Aspi01Gene01766 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0022.g016036 No alias not classified & original description: CDS=117-785 0.06 OrthoFinder output from all 47 species
Dac_g10126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01030562001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os01g65630.1 LOC_Os01g65630 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os07g37820.1 LOC_Os07g37820 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g43363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010569_P001 Zm00001e010569 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e019078_P001 Zm00001e019078 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e031716_P001 Zm00001e031716 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!