Solyc03g006510.4.1 (Solyc03g006510)

Aliases : Solyc03g006510

Description : light chain of clathrin triskelion

Gene families : OG0002188 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002188_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g006510.4.1

Target	Alias	Description	ECC score	Gene Family Method
AT2G20760	No alias	Clathrin light chain protein	0.04	OrthoFinder output from all 47 species
AT2G40060	No alias	Clathrin light chain protein	0.03	OrthoFinder output from all 47 species
AT3G51890	No alias	Clathrin light chain protein	0.07	OrthoFinder output from all 47 species
Aev_g37421	No alias	light chain of clathrin triskelion & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0320.g064477	No alias	light chain of clathrin triskelion & original...	0.03	OrthoFinder output from all 47 species
Gb_14357	No alias	light chain of clathrin triskelion	0.03	OrthoFinder output from all 47 species
Len_g30485	No alias	light chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
MA_10435137g0010	No alias	light chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
Mp2g03080.1	No alias	light chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
Ore_g30776	No alias	light chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g09853	No alias	light chain of clathrin triskelion & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g09545	No alias	light chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e041946_P001	Zm00001e041946	light chain of clathrin triskelion	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	Interproscan
CC	GO:0030132	clathrin coat of coated pit	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004129	cytochrome-c oxidase activity	IEP	HCCA
MF	GO:0005048	signal sequence binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005740	mitochondrial envelope	IEP	HCCA
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	HCCA
BP	GO:0017003	protein-heme linkage	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
BP	GO:0017006	protein-tetrapyrrole linkage	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000996	Clathrin_L-chain	97	240

External Links

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Solyc03g006510.4.1 (Solyc03g006510)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation