Solyc03g005380.3.1 (Solyc03g005380)


Aliases : Solyc03g005380

Description : component Sec23 of Sec23/24 cargo adaptor subcomplex


Gene families : OG0001171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001171_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g005380.3.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g117385 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001408.15 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.01 OrthoFinder output from all 47 species
Mp2g15530.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.01 OrthoFinder output from all 47 species
Nbi_g07000 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Ppi_g30808 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Spa_g17950 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Spa_g53620 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR012990 Sec23_24_beta_S 424 524
IPR006900 Sec23/24_helical_dom 536 634
IPR006896 Sec23/24_trunk_dom 157 407
IPR006895 Znf_Sec23_Sec24 53 91
IPR007123 Gelsolin-like_dom 650 736
No external refs found!