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  5. Solyc02g089600.3.1

Solyc02g089600.3.1 (Solyc02g089600)


Aliases : Solyc02g089600

Description : pre-40S ribosomal subunit assembly factor (RRP7)


Gene families : OG0005810 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005810_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g089600.3.1

Target Alias Description ECC score Gene Family Method Actions
AT5G38720 No alias unknown protein; Has 13419 Blast hits to 9093 proteins... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000704.18 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_30657 No alias pre-40S ribosomal subunit assembly factor (RRP7) 0.03 OrthoFinder output from all 47 species
LOC_Os02g49620.1 LOC_Os02g49620 pre-40S ribosomal subunit assembly factor (RRP7) 0.03 OrthoFinder output from all 47 species
Smo422020 No alias No description available 0.04 OrthoFinder output from all 47 species
Zm00001e015713_P002 Zm00001e015713 pre-40S ribosomal subunit assembly factor (RRP7) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR024326 RRP7_C 210 332
No external refs found!