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  5. Solyc02g089370.2.1

Solyc02g089370.2.1 (Solyc02g089370)


Aliases : Solyc02g089370

Description : no hits & (original description: none)


Gene families : OG0004160 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004160_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g089370.2.1

Target Alias Description ECC score Gene Family Method Actions
AT5G15680 No alias ARM repeat superfamily protein 0.18 OrthoFinder output from all 47 species
Adi_g059761 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.04 OrthoFinder output from all 47 species
Ala_g02730 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.05 OrthoFinder output from all 47 species
Cba_g02118 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.02 OrthoFinder output from all 47 species
Ceric.1Z029100.1 Ceric.1Z029100 scaffold component *(FRY) of RAM signalling pathway &... 0.11 OrthoFinder output from all 47 species
Cre17.g703750 No alias No description available 0.04 OrthoFinder output from all 47 species
Dcu_g04159 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.09 OrthoFinder output from all 47 species
Dde_g12439 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.05 OrthoFinder output from all 47 species
Ehy_g24660 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.03 OrthoFinder output from all 47 species
GSVIVT01036514001 No alias No description available 0.07 OrthoFinder output from all 47 species
Gb_13939 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_24208 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os02g58410.1 LOC_Os02g58410 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
MA_10432508g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10435894g0010 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
MA_10436406g0020 No alias no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Mp5g03120.1 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Msp_g14653 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.04 OrthoFinder output from all 47 species
Ore_g25800 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.08 OrthoFinder output from all 47 species
Pir_g14053 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.02 OrthoFinder output from all 47 species
Ppi_g18940 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015028 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.04 OrthoFinder output from all 47 species
Sam_g29289 No alias scaffold component *(FRY) of RAM signalling pathway &... 0.04 OrthoFinder output from all 47 species
Smo84835 No alias No description available 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR025614 Cell_morpho_N 85 585
IPR029473 MOR2-PAG1_mid 622 1630
No external refs found!