Solyc02g089210.4.1 (AGL7, AP1, Solyc02g089210)

Aliases : AGL7, AP1, Solyc02g089210

Description : transcription factor (MADS/AGL)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g089210.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	ANR1, AGL44,...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
AMTR_s00071p00193200	STK, AGL11,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00089p00081270	PI,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00140p00045380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.05	OrthoFinder output from all 47 species
AT2G22630	AGL17	AGAMOUS-like 17	0.05	OrthoFinder output from all 47 species
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.04	OrthoFinder output from all 47 species
AT2G45650	AGL6	AGAMOUS-like 6	0.03	OrthoFinder output from all 47 species
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT4G11880	AGL14	AGAMOUS-like 14	0.04	OrthoFinder output from all 47 species
AT4G24540	AGL24	AGAMOUS-like 24	0.06	OrthoFinder output from all 47 species
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.09	OrthoFinder output from all 47 species
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.08	OrthoFinder output from all 47 species
Aev_g06477	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g09257	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g05851	AGL30	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14204	AGL18	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g33356	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g33966	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene15812.t2	AGL13, Aspi01Gene15812	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene19451.t1	SOC1, AGL20,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene19457.t1	AGL16, Aspi01Gene19457	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene48068.t1	AGL30, Aspi01Gene48068	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene54037.t3	Aspi01Gene54037	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene68020.t1	AGL6, Aspi01Gene68020	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0003.g007710	AGL6	MADS/AGL-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Azfi_s0009.g011788	XAL1, AGL12	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.04G082300.1	AGL28, Ceric.04G082300	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.12G051800.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dac_g08553	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g33443	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g38503	AGL42	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g32401	AGL10, CAL1, CAL	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01006592001	AGL61, DIA	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01008139001	AGL2, SEP1	RNA biosynthesis.transcriptional activation.MADS box...	0.06	OrthoFinder output from all 47 species
GSVIVT01008560001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01008806001	PI	RNA biosynthesis.transcriptional activation.MADS box...	0.05	OrthoFinder output from all 47 species
GSVIVT01009171001	SVP, AGL22	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01012250001	AGL7, AP1	RNA biosynthesis.transcriptional activation.MADS box...	0.06	OrthoFinder output from all 47 species
GSVIVT01019883001	GL19, AGL19	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01021303001	SHP2, AGL5	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01033253001	AGL15	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01037022001	AGL62	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01038474001	AGL16	RNA biosynthesis.transcriptional activation.MADS box...	0.05	OrthoFinder output from all 47 species
Gb_03068	AGL16	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Gb_03806	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Gb_19897	AGL16	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.05	OrthoFinder output from all 47 species
Gb_28587	AGL8, FUL	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Gb_41550	No alias	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species
LOC_Os01g10504.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os02g45770.1	AGL6, LOC_Os02g45770	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
LOC_Os03g54160.1	AGL7, AP1, LOC_Os03g54160	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os03g54170.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os06g23950.1	LOC_Os06g23950	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
LOC_Os06g23980.1	AGL16, LOC_Os06g23980	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
LOC_Os09g32948.1	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Len_g43702	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g08300	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g23025	AGL21	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_13933g0010	AGL13	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_18048g0010	AGL21	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_19296g0010	AGL9, SEP3	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_19387g0010	AGL9, SEP3	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
MA_2986g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_333471g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_347547g0010	SOC1, AGL20, ATSOC1	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_57186g0010	AGL15	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_6279308g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
MA_75656g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_8748850g0010	AGL24	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_9841429g0010	AGL9, SEP3	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Msp_g21617	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g11231	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g18297	AGL21	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g02948	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g46921	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g51490	AGL24	regulatory protein *(SVP/AGL24) of floral meristem...	0.03	OrthoFinder output from all 47 species
Pir_g54533	MAF2, AGL31	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002217	AGL15	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006239	SHP2, AGL5	not classified & original description: CDS=497-1018	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0271.g027022	AGL7, AP1	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sam_g26914	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g080785.1.1	AGL61, DIA,...	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species
Solyc01g106710.1.1	AGL62, Solyc01g106710	component MED19 of head module of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Solyc06g059970.4.1	PI, Solyc06g059970	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e016529_P004	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006952	defense response	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	85	173
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Solyc02g089210.4.1 (AGL7, AP1, Solyc02g089210)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation