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  5. Solyc02g086510.4.1

Solyc02g086510.4.1 (Solyc02g086510)


Aliases : Solyc02g086510

Description : Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana (sp|q9lvx1|c3h41_arath : 365.0)


Gene families : OG0001970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g086510.4.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g055515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30703 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Als_g15540 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Aob_g09082 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Ehy_g01629 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
GSVIVT01032423001 No alias Zinc finger CCCH domain-containing protein 41... 0.03 OrthoFinder output from all 47 species
Gb_08836 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Gb_29092 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.02 OrthoFinder output from all 47 species
LOC_Os04g32340.1 LOC_Os04g32340 Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Lfl_g10579 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Mp5g00230.1 No alias Zinc finger CCCH domain-containing protein 41... 0.02 OrthoFinder output from all 47 species
Ore_g15250 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Ore_g27253 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Pnu_g25072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001638 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
Sam_g29691 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Smo437689 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 242 304
No external refs found!