Aliases : Solyc02g085270
Description : no hits & (original description: none)
Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc02g085270.1.1 | |
Cluster | HCCA: Cluster_49 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G53820 | No alias | RING/U-box superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
AT1G72220 | No alias | RING/U-box superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
AT4G10160 | No alias | RING/U-box superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
AT5G41430 | No alias | RING/U-box superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
AT5G41440 | No alias | RING/U-box superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g045665 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g32509 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g00595 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
Als_g12786 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene37667.t1 | ATL2, TL2,... | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene41078.t1 | Aspi01Gene41078 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g07345 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Cba_g09555 | BRH1 | E3 ubiquitin ligase *(BRH) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g77129 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g40181 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
LOC_Os04g49550.1 | RHA3A, LOC_Os04g49550 | RING-H2-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os07g42610.1 | RHA3B, LOC_Os07g42610 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp.... | 0.01 | OrthoFinder output from all 47 species | |
Len_g04609 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g20892 | ATL2, TL2 | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g26673 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g26927 | BRH1 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
MA_9521306g0010 | ATL2, TL2 | RING-H2-class E3 ligase | 0.01 | OrthoFinder output from all 47 species | |
Ore_g32541 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase &... | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g088450.2.1 | Solyc01g088450 | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species | |
Solyc04g054370.1.1 | BRH1, Solyc04g054370 | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species | |
Zm00001e007129_P001 | Zm00001e007129 | RING-H2-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e015470_P001 | ATL8, Zm00001e015470 | RING-H2-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e023969_P001 | Zm00001e023969 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e035560_P001 | ATL3, Zm00001e035560 | RING-H2-class E3 ligase | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004402 | histone acetyltransferase activity | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | HCCA |
MF | GO:0004527 | exonuclease activity | IEP | HCCA |
MF | GO:0004672 | protein kinase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
BP | GO:0006473 | protein acetylation | IEP | HCCA |
BP | GO:0006475 | internal protein amino acid acetylation | IEP | HCCA |
BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
MF | GO:0016301 | kinase activity | IEP | HCCA |
BP | GO:0016310 | phosphorylation | IEP | HCCA |
BP | GO:0016570 | histone modification | IEP | HCCA |
BP | GO:0016573 | histone acetylation | IEP | HCCA |
MF | GO:0016740 | transferase activity | IEP | HCCA |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | HCCA |
MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | HCCA |
BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | HCCA |
BP | GO:0018394 | peptidyl-lysine acetylation | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
MF | GO:0019899 | enzyme binding | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | HCCA |
BP | GO:0036211 | protein modification process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
BP | GO:0043543 | protein acylation | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001841 | Znf_RING | 255 | 297 |
No external refs found! |