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  5. Solyc02g084760.3.1

Solyc02g084760.3.1 (UBC18, Solyc02g084760)


Aliases : UBC18, Solyc02g084760

Description : Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana (sp|q9fmm0|ubc18_arath : 257.0)


Gene families : OG0001468 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001468_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc02g084760.3.1

Target Alias Description ECC score Gene Family Method Actions
Als_g31080 UBC18 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.03 OrthoFinder output from all 47 species
Aop_g00932 UBC16 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g00641 UBC16 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.02 OrthoFinder output from all 47 species
Gb_19350 UBC16 Probable ubiquitin-conjugating enzyme E2 16... 0.02 OrthoFinder output from all 47 species
Len_g00264 UBC16 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.03 OrthoFinder output from all 47 species
Msp_g11831 UBC16 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g01644 UBC16 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.02 OrthoFinder output from all 47 species
Ore_g06318 UBC16 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004782 UBC16 not classified & original description: CDS=1-837 0.04 OrthoFinder output from all 47 species
Zm00001e017907_P001 UBC15, ATUBC2-1,... Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0032422 purine-rich negative regulatory element binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 19 154
No external refs found!