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  5. Solyc02g084750.4.1

Solyc02g084750.4.1 (Solyc02g084750)


Aliases : Solyc02g084750

Description : CDK5RAP1-like protein OS=Arabidopsis thaliana (sp|q8h0v1|ck5p1_arath : 665.0)


Gene families : OG0006702 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006702_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g084750.4.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00236530 evm_27.TU.AmTr_v1... CDK5RAP1-like protein OS=Oryza sativa subsp. japonica 0.06 OrthoFinder output from all 47 species
AT4G36390 No alias Methylthiotransferase 0.07 OrthoFinder output from all 47 species
GSVIVT01018858001 No alias CDK5RAP1-like protein OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os11g38030.1 LOC_Os11g38030 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.11 OrthoFinder output from all 47 species
Mp3g13110.1 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Smo180500 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
Zm00001e011273_P001 Zm00001e011273 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007197 rSAM 69 266
IPR002792 TRAM_dom 321 395
No external refs found!