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  5. Solyc02g081290.4.1

Solyc02g081290.4.1 (Solyc02g081290)


Aliases : Solyc02g081290

Description : RNA helicase (Prp28)


Gene families : OG0002793 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002793_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g081290.4.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00248520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
AT2G33730 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Aob_g03468 No alias RNA helicase *(SMA1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.22G074000.1 Ceric.22G074000 RNA helicase *(SMA1) & original description:... 0.06 OrthoFinder output from all 47 species
GSVIVT01029438001 No alias RNA processing.RNA splicing.spliceosome... 0.04 OrthoFinder output from all 47 species
LOC_Os03g50090.2 LOC_Os03g50090 RNA helicase (Prp28) 0.03 OrthoFinder output from all 47 species
Lfl_g12057 No alias RNA helicase *(SMA1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_90357g0010 No alias DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp1g21580.1 No alias RNA helicase (Prp28) 0.02 OrthoFinder output from all 47 species
Pir_g07723 No alias RNA helicase *(SMA1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04616 No alias RNA helicase *(SMA1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo149865 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Smo165735 No alias RNA processing.RNA splicing.spliceosome... 0.05 OrthoFinder output from all 47 species
Tin_g02138 No alias RNA helicase *(SMA1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005420_P001 Zm00001e005420 RNA helicase (Prp28) 0.03 OrthoFinder output from all 47 species
Zm00001e012203_P002 Zm00001e012203 RNA helicase (Prp28) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 340 448
IPR001650 Helicase_C 484 591
No external refs found!