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  5. Solyc02g081250.3.1

Solyc02g081250.3.1 (Solyc02g081250)


Aliases : Solyc02g081250

Description : Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana (sp|q9m9x9|ppr18_arath : 1150.0)


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g081250.3.1
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Adi_g088439 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16321 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65113.t1 Aspi01Gene65113 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04091 No alias regulatory protein *(RLD) of gravity sensing & original... 0.02 OrthoFinder output from all 47 species
Dde_g18130 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g30699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16323 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_22212 PRAF1 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
LOC_Os05g46740.1 LOC_Os05g46740 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Lfl_g05030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14939 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g13544 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 479 527
IPR000408 Reg_chr_condens 583 631
IPR000408 Reg_chr_condens 309 357
IPR000408 Reg_chr_condens 415 464
IPR002885 Pentatricopeptide_repeat 1728 1757
IPR002885 Pentatricopeptide_repeat 1900 1933
IPR002885 Pentatricopeptide_repeat 1977 2001
IPR002885 Pentatricopeptide_repeat 1329 1357
IPR002885 Pentatricopeptide_repeat 2013 2041
Pentatricopeptide_repeat 1296 1322
IPR002885 Pentatricopeptide_repeat 1548 1571
IPR000306 Znf_FYVE 640 701
IPR013591 Brevis_radix_dom 1007 1061
IPR002885 Pentatricopeptide_repeat 1764 1812
IPR002885 Pentatricopeptide_repeat 1581 1622
IPR002885 Pentatricopeptide_repeat 1465 1510
IPR002885 Pentatricopeptide_repeat 1643 1692
IPR002885 Pentatricopeptide_repeat 1834 1882
IPR002885 Pentatricopeptide_repeat 1392 1439
IPR027988 BRX_N 886 910
No external refs found!