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  5. Solyc02g080420.4.1

Solyc02g080420.4.1 (ATRBP45C, Solyc02g080420)


Aliases : ATRBP45C, Solyc02g080420

Description : mRNA-binding regulatory factor (RBP45/47)


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g080420.4.1

Target Alias Description ECC score Gene Family Method Actions
AT1G47490 ATRBP47C, RBP47C RNA-binding protein 47C 0.02 OrthoFinder output from all 47 species
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.04 OrthoFinder output from all 47 species
AT5G54900 ATRBP45A, RBP45A RNA-binding protein 45A 0.03 OrthoFinder output from all 47 species
Adi_g113480 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aop_g10963 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Cba_g05169 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Gb_06023 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Gb_20979 ATRBP47C', RBP47C' Polyadenylate-binding protein RBP47 OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
MA_10430323g0010 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Mp8g07840.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species
Ore_g09196 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ore_g34352 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008579 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Sam_g39348 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Zm00001e022780_P001 ATRBP47C',... mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004019 adenylosuccinate synthase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 81 146
IPR000504 RRM_dom 174 243
IPR000504 RRM_dom 280 344
No external refs found!