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  5. Solyc02g078970.4.1

Solyc02g078970.4.1 (Solyc02g078970)


Aliases : Solyc02g078970

Description : component Prp17 of non-snRNP MOS4-associated complex


Gene families : OG0006597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g078970.4.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Aop_g12864 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Ceric.05G062500.1 Ceric.05G062500 substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000663.18 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre04.g226450 No alias RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Dac_g06482 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Dcu_g08213 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01020240001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.07 OrthoFinder output from all 47 species
Lfl_g16015 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Mp1g17450.1 No alias component Prp17 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Pir_g04813 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Ppi_g04570 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Smo78344 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Spa_g07836 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquitin... 0.04 OrthoFinder output from all 47 species
Tin_g01996 No alias substrate adaptor *(PRP17) of CUL4-based E3 ubiquiTin... 0.03 OrthoFinder output from all 47 species
Zm00001e001921_P002 Zm00001e001921 component Prp17 of non-snRNP MOS4-associated complex 0.06 OrthoFinder output from all 47 species
Zm00001e038006_P002 Zm00001e038006 component Prp17 of non-snRNP MOS4-associated complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 399 436
IPR001680 WD40_repeat 533 570
IPR001680 WD40_repeat 313 351
IPR001680 WD40_repeat 270 308
IPR001680 WD40_repeat 492 527
No external refs found!