Solyc02g069160.3.1 (CSTF64, Solyc02g069160)

Aliases : CSTF64, Solyc02g069160

Description : component CstF64/Rna15 of Cleavage Stimulatory Factor (CstF) complex

Gene families : OG0001642 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001642_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g069160.3.1
Cluster	HCCA: Cluster_77

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00229100	CSTF64,...	RNA processing.RNA 3-end polyadenylation.Cleavage...	0.03	OrthoFinder output from all 47 species
Adi_g079617	CSTF64	component *(ESP1) of Cleavage Stimulatory Factor (CstF)...	0.02	OrthoFinder output from all 47 species
Adi_g079618	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0245.g059945	CSTF64	component *(CstF64/Rna15) of Cleavage Stimulatory Factor...	0.03	OrthoFinder output from all 47 species
Ceric.11G063300.1	ESP1, Ceric.11G063300	component *(ESP1) of Cleavage Stimulatory Factor (CstF)...	0.04	OrthoFinder output from all 47 species
Cre01.g024200	CSTF64	RNA processing.RNA 3-end polyadenylation.Cleavage...	0.02	OrthoFinder output from all 47 species
GSVIVT01008293001	ESP1	RNA processing.RNA 3-end polyadenylation.Cleavage...	0.06	OrthoFinder output from all 47 species
LOC_Os05g43780.1	ESP1, LOC_Os05g43780	component ESP1 of Cleavage Stimulatory Factor (CstF) complex	0.06	OrthoFinder output from all 47 species
MA_8861g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Spa_g25960	CSTF64	component *(CstF64/Rna15) of Cleavage Stimulatory Factor...	0.03	OrthoFinder output from all 47 species
Zm00001e032123_P001	ESP1, Zm00001e032123	component ESP1 of Cleavage Stimulatory Factor (CstF) complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003684	damaged DNA binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0010498	proteasomal protein catabolic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR026896	CSTF_C	474	507
IPR025742	CSTF2_hinge	156	223
IPR000504	RRM_dom	11	81

External Links

No external refs found!

Solyc02g069160.3.1 (CSTF64, Solyc02g069160)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation