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  5. Solyc02g061980.3.1

Solyc02g061980.3.1 (Solyc02g061980)


Aliases : Solyc02g061980

Description : La-related protein 1C OS=Arabidopsis thaliana (sp|q94k80|lrp1c_arath : 144.0)


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g061980.3.1

Target Alias Description ECC score Gene Family Method Actions
AT4G35890 No alias winged-helix DNA-binding transcription factor family protein 0.04 OrthoFinder output from all 47 species
Aev_g38233 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Ala_g04484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g71663 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.29G060800.1 Ceric.29G060800 not classified & original description: pacid=50624742... 0.03 OrthoFinder output from all 47 species
Dcu_g05816 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g19294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19632 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01006333001 No alias La-related protein 1C OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_04152 No alias La-related protein 1C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Lfl_g18424 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_114481g0010 No alias La-related protein 1B OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_1763g0010 No alias La-related protein 1A OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g26140 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44181 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g27548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46280 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e010261_P001 Zm00001e010261 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e025537_P001 Zm00001e025537 XRN4-exoribonuclease cofactor (LARP1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 358 413
No external refs found!