Solyc02g031970.1.1 (Solyc02g031970)

Aliases : Solyc02g031970

Description : component mtRPL7/L12 of large ribosomal subunit proteome

Gene families : OG0000926 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000926_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g031970.1.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G70190	No alias	Ribosomal protein L7/L12, oligomerisation;Ribosomal...	0.11	OrthoFinder output from all 47 species
AT3G06040	No alias	Ribosomal protein L12/ ATP-dependent Clp protease...	0.05	OrthoFinder output from all 47 species
AT4G36420	No alias	Ribosomal protein L12 family protein	0.08	OrthoFinder output from all 47 species
Adi_g066066	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g01020	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g20522	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0004.g008259	No alias	not classified & original description: CDS=1-588	0.03	OrthoFinder output from all 47 species
Ceric.34G065900.1	Ceric.34G065900	not classified & original description: pacid=50622739...	0.03	OrthoFinder output from all 47 species
Dac_g05009	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007737001	No alias	No description available	0.03	OrthoFinder output from all 47 species
Gb_26365	No alias	component mtRPL7/L12 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
LOC_Os02g10540.1	LOC_Os02g10540	component mtRPL7/L12 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Lfl_g03909	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_137800g0010	No alias	component mtRPL7/L12 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Mp1g23110.1	No alias	component mtRPL7/L12 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Pir_g11119	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g12392	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g25875	No alias	component *(bL12m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Smo49023	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008932	Ribosomal_L7/L12_oligo	85	129
IPR013823	Ribosomal_L7/L12_C	148	213

External Links

No external refs found!

Solyc02g031970.1.1 (Solyc02g031970)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation