1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g112320.3.1

Solyc01g112320.3.1 (FRS5, Solyc01g112320)


Aliases : FRS5, Solyc01g112320

Description : transcription factor (FAR1)


Gene families : OG0002906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002906_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g112320.3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G52520 FRS6 FAR1-related sequence 6 0.02 OrthoFinder output from all 47 species
AT1G76320 FRS4 FAR1-related sequence 4 0.04 OrthoFinder output from all 47 species
AT3G22170 FHY3 far-red elongated hypocotyls 3 0.04 OrthoFinder output from all 47 species
GSVIVT01015829001 FAR1 RNA biosynthesis.transcriptional activation.FAR1... 0.03 OrthoFinder output from all 47 species
GSVIVT01037455001 FRS3 RNA biosynthesis.transcriptional activation.FAR1... 0.05 OrthoFinder output from all 47 species
LOC_Os02g33750.1 FRS7, LOC_Os02g33750 transcription factor (FAR1) 0.02 OrthoFinder output from all 47 species
LOC_Os02g39520.2 FRS6, LOC_Os02g39520 transcription factor (FAR1) 0.03 OrthoFinder output from all 47 species
LOC_Os03g50900.1 FRS5, LOC_Os03g50900 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species
LOC_Os03g62660.1 FRS8, LOC_Os03g62660 transcription factor (FAR1) 0.08 OrthoFinder output from all 47 species
LOC_Os04g40060.1 FRS6, LOC_Os04g40060 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species
LOC_Os07g31400.1 FRS4, LOC_Os07g31400 transcription factor (FAR1) 0.06 OrthoFinder output from all 47 species
LOC_Os07g37630.1 FRS7, LOC_Os07g37630 transcription factor (FAR1) 0.07 OrthoFinder output from all 47 species
LOC_Os07g42400.1 FAR1, LOC_Os07g42400 transcription factor (FAR1) 0.03 OrthoFinder output from all 47 species
LOC_Os08g06930.1 FRS9, LOC_Os08g06930 transcription factor (FAR1) 0.06 OrthoFinder output from all 47 species
LOC_Os12g12380.1 FRS5, LOC_Os12g12380 transcription factor (FAR1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 286 378
IPR007527 Znf_SWIM 554 600
IPR004330 FAR1_DNA_bnd_dom 74 165
No external refs found!