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  5. Solyc01g112020.3.1

Solyc01g112020.3.1 (Solyc01g112020)


Aliases : Solyc01g112020

Description : Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana (sp|q8vyr5|pp351_arath : 555.0)


Gene families : OG0005110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g112020.3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00166p00033890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g35850,... 0.03 OrthoFinder output from all 47 species
AT4G35850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.1 OrthoFinder output from all 47 species
Aop_g01276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G086100.1 Ceric.05G086100 not classified & original description: pacid=50578539... 0.03 OrthoFinder output from all 47 species
Gb_40110 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.02 OrthoFinder output from all 47 species
LOC_Os05g05320.1 LOC_Os05g05320 Pentatricopeptide repeat-containing protein At4g35850,... 0.11 OrthoFinder output from all 47 species
Len_g03290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434276g0010 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.03 OrthoFinder output from all 47 species
Mp7g04570.1 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.1 OrthoFinder output from all 47 species
Spa_g11968 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e027516_P001 Zm00001e027516 Pentatricopeptide repeat-containing protein At4g35850,... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 107 155
IPR002885 Pentatricopeptide_repeat 37 81
No external refs found!