Solyc01g110490.4.1 (Solyc01g110490)

Aliases : Solyc01g110490

Description : tRNA dihydrouridine synthase

Gene families : OG0004183 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004183_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g110490.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s02556p00000250	evm_27.TU.AmTr_v1...	No description available	0.02	OrthoFinder output from all 47 species
Adi_g008114	No alias	tRNA dihydrouridine synthase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0129.g048976	No alias	tRNA dihydrouridine synthase & original description: CDS=94-2298	0.03	OrthoFinder output from all 47 species
Ceric.04G089800.1	Ceric.04G089800	tRNA dihydrouridine synthase & original description:...	0.03	OrthoFinder output from all 47 species
Cre04.g229948	No alias	RNA processing.RNA modification.dihydrouridylation.tRNA...	0.01	OrthoFinder output from all 47 species
GSVIVT01024158001	No alias	RNA processing.RNA modification.dihydrouridylation.tRNA...	0.04	OrthoFinder output from all 47 species
LOC_Os04g02730.1	LOC_Os04g02730	tRNA dihydrouridine synthase	0.03	OrthoFinder output from all 47 species
MA_10435966g0030	No alias	tRNA dihydrouridine synthase	0.03	OrthoFinder output from all 47 species
Zm00001e040618_P001	Zm00001e040618	tRNA dihydrouridine synthase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	None	Extended
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	IEA	Interproscan
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0106413	dihydrouridine synthase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001269	DUS_fam	353	620
IPR041367	Znf-CCCH_4	115	140

External Links

No external refs found!

Solyc01g110490.4.1 (Solyc01g110490)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation